Papers to Appear in Biometrics

Current Issue: Vol. 75, No. 3, September 2019


Fast likelihood-based inference for latent count models using the saddlepoint approximation
W. Zhang, M. V. Bravington, and R. M. Fewster

An iterative penalized least squares approach to sparse canonical correlation analysis
Qing Mai and Xin Zhang

High dimensional mediation analysis with latent variables
Andriy Derkach, Ruth M. Pfeiffer, and Ting Huei Chen, and Joshua N. Sampson

A hybrid omnibus test in generalized semiparametric single-index models with high-dimensional covariate sets
Yangyi Xu, Inyoung Kim, and Raymond J. Carroll

Causal Inference When Counterfactuals Depend on the Proportion of All Subjects Exposed
Caleb H. Miles, Maya Petersen, and Mark J. van der Laan

Causal inference with interfering units for cluster and population level treatment allocation programs
Georgia Papadogeorgou, Fabrizia Mealli, and Corwin M. Zigler

Granger Mediation Analysis of Multiple Time Series with an Application to fMRI
Yi Zhao and Xi Luo

Improved methods for estimating abundance and related demographic parameters from mark-resight data
Brett T. McClintock, Gary C. White, and Moira A. Pryde

Accounting for phenology in the analysis of animal movement
Henry R. Scharf, Mevin B. Hooten, Ryan R. Wilson, George M. Durner, and Todd C. Atwood

A cluster-adjusted rank-based test for a clinical trial concerning multiple endpoints with application to dietary intervention assessment
Wei Zhang, Aiyi Liu, Larry L. Tang, and Qizhai Li

Bayesian modeling of air pollution extremes using nested multivariate max-stable processes
Sabrina Vettori, Raphael Huser, and Marc G. Genton

Inference for case-control studies with incident and prevalent cases
Marlena Maziarz, Yukun Liu, Jing Qin, and Ruth M. Pfeiffer

A Varying-Coefficient Generalized Odds Rate Model with Time-Varying Exposure: An Application to Fitness and CVD Mortality
Jie Zhou, Jiajia Zhang, Alexander C. Mclain, Wenbin Lu, Xuemei Sui, and James W. Hardin

A Statistical Method for Joint Estimation of Cis-eQTLs and Parent-of-Origin Effects under Family Trio Design
Vasyl Zhabotynsky, Kaoru Inoue, Terry Magnuson, J. Mauro Calabrese, and Wei Sun

Prediction Analysis for Microbiome Sequencing Data
Tao Wang, Can Yang, and Hongyu Zhao

Familywise error control in multi-armed response-adaptive trials
D. S. Robertson and J. M. S. Wason

Threshold Selection for Covariance Estimation
Yumou Qiu and Janaka S. S. Liyanage

Confidence Bands for Multiplicative Hazards Models: Flexible Resampling Approaches
Dennis Dobler, Markus Pauly, and Thomas H. Scheike


A Sensitivity Analysis Approach for Informative Dropout using Shared Parameter Models
Li Su, Qiuju Li, Jessica K. Barrett, and Michael J. Daniels

Measurement error correction and sensitivity analysis in longitudinal dietary intervention studies using an external validation study
Juned Siddique, Michael J. Daniels, Raymond J. Carroll, Trivellore E. Raghunathan, Elizabeth A. Stuart, and Laurence S. Freedman

Marginal analysis of ordinal clustered longitudinal data with informative cluster size
Aya A. Mitani, Elizabeth K. Kaye, and Kerrie P. Nelson

Empirical-likelihood-based criteria for model selection on marginal analysis of longitudinal data with dropout missingness
Chixiang Chen, Yuan Xue, Lijun Zhang, Biyi Shen, and Ming Wang

Approximate Bayesian inference for discretely observed continuous-time multi-state models
Andrea Tancredi

A Bayesian hierarchical model estimating CACE in meta-analysis of randomized clinical trials with noncompliance
Jincheng Zhou, James S. Hodges, M. Fareed K. Suri, and Haitao Chu

A Bayesian random partition model for sequential refinement and coagulation
Carlos Tadeu Pagani Zanini, Peter Mueller, Yuan Ji, and Fernando A. Quintana

Efficient methods for signal detection from correlated adverse events in clinical trials
Guoqing Diao, Guanghan F. Liu, Donglin Zeng, William Wang, Xianming Tan, Joseph F. Heyse, and Joseph G. Ibrahim

A Two-Stage Experimental Design for Dilution Assays
Jake Ferguson, Tanya A. Miura, and Craig R. Miller

Cross-sectional HIV incidence estimation accounting for heterogeneity across communities
Yuejia Xu, Oliver Laeyendecker, and Rui Wang

Double-wavelet transform for multi-subject task-induced functional magnetic resonance imaging data
Minchun Zhou, David Badre, and Hakmook Kang


Papers to appear in future issues of Biometrics

Copula-based semiparametric models for spatio-temporal data
Yanlin Tang, Huixia Judy Wang, Ying Sun, and Amanda S. Hering

Analysis of Covariance (ANCOVA) in Randomized Trials: More Precision and Valid Confidence Intervals, Without Model Assumptions
Bingkai Wang, Elizabeth L. Ogburn, and Michael Rosenblum

Assessing Alignment Between Functional Markers and Ordinal Outcomes Based on Broad Sense Agreement
Jeong Hoon Jang, Limin Peng, and Amita K. Manatunga

Nonparametric variable importance assessment using machine learning techniques
Brian D. Williamson, Peter B. Gilbert, Noah Simon, and Marco Carone

Multiclass linear discriminant analysis with ultrahigh-dimensional features
Yanming Li, Hyokyoung G. Hong, and Yi Li

Using a surrogate marker for early testing of a treatment effect
Layla Parast, Tianxi Cai, and Lu Tian

Variance Component Tests of Sparse Multivariate Mediation Effects Under Composite Null Hypotheses
Yen-Tsung Huang

Fast Bayesian inference in large Gaussian graphical models
Gwenael G. R. Leday and Sylvia Richardson

Integrative analysis of genetical genomics data incorporating network structures
Bin Gao, Xu Liu, Hongzhe Li, and Yuehua Cui

Scalable Estimation and Regularization for the Logistic Normal Multinomial Model
Jingru Zhang and Wei Lin

Detection of differentially expressed genes in discrete single-cell RNA sequencing data using a hurdle model with correlated random effects
Michael Sekula, Jeremy Gaskins, and Susmita Datta

Incorporating prior information with fused sparse group lasso: Application to prediction of clinical measures from neuroimages
Joanne C. Beer, Howard J. Aizenstein, Stewart J. Anderson, and Robert T. Krafty

Penalized Local Polynomial Regression for Spatial Data
Wu Wang and Ying Sun

Pleiotropy informed adaptive association test of multiple traits using GWAS summary data
Maria Masotti, Bin Guo, and Baolin Wu

Open population maximum likelihood spatial capture-recapture
R. Glennie, D. L. Borchers, M. Murchie, B. J. Harmsen, and R. J. Foster

Improved detection of epigenetic marks with mixed effects hidden Markov models
Pedro L. Baldoni, Naim U. Rashid, and Joseph G. Ibrahim

Multi-category individualized treatment regime using outcome weighted learning
Xinyang Huang, Yair Goldberg, and Jin Xu

Semiparametric Frailty Models for Zero-Inflated Event Count Data in the Presence of Informative Dropout
Guoqing Diao, Donglin Zeng, Kuolung Hu, and Joseph G. Ibrahim

Directional penalties for optimal matching in observational studies
Ruoqi Yu and Paul R. Rosenbaum

Leveraging nonlinear dynamic models to predict progression of neuroimaging biomarkers
Ming Sun, Donglin Zeng, and Yuanjia Wang

Quantifying personal exposure to air pollution from smartphone-based location data
F. Finazzi and L. Paci

Common reducing subspace model and network alternation analysis
Wenjing Wang, Xin Zhang, and Lexin Li

Integer-Valued Functional Data Analysis for Measles Forecasting
Daniel R. Kowal

Dynamic regression with recurrent events
J. E. Soh and Yijian Huang

Semiparametric Mixed-Scale Models Using Shared Bayesian Forests
Antonio R. Linero, Debajyoti Sinha, and Stuart R. Lipsitz

Truncated Simes tests
John Lawrence

Model selection for G-estimation of dynamic treatment regimes
Michael P. Wallace, Erica E. M. Moodie, and David A. Stephens

Constructing a Confidence Interval for the Fraction who Benefit From Treatment, Using Randomized Trial Data
Emily J. Huang, Ethan X. Fang, Daniel F. Hanley, and Michael Rosenblum

On Null Hypotheses in Survival Analysis
Mats Julius Stensrud, Kjetil Røysland, and Pål Christie Ryalen

Robust Inference for the Stepped Wedge Design
James P. Hughes, Patrick J. Heagerty, Fan Xia, and Yuqi Ren

Structural Learning and Integrative Decomposition of Multi-View Data
Irina Gaynanova, and Gen Li

Robust Spatial Extent Inference with a Semiparametric Bootstrap Joint Testing Procedure
Simon N. Vandekar, Theodore D. Satterthwaite, Cedric H. Xia, Azeez Adebimpe, Kosha Ruparel, Ruben C. Gur, Raquel E. Gur, and Russell T. Shinohara

Estimation of covariance matrix of multivariate longitudinal data using modified Choleksky and hypersphere decompositions
Keunbaik Lee, Hyunsoon Cho, Min-Sun Kwak, and Eun Jin Jang

A response-adaptive randomization procedure for multi-armed clinical trials with normally distributed outcomes
S. Faye Williamson, and Sofia S. Villar

Autologistic Network Model on Binary Data for Disease Progression Study
Yei Eun Shin, Huiyan Sang, Dawei Liu, Toby A. Ferguson, and Peter X. K. Song

Testing Independence Between two Random Sets for the Analysis of Colocalization in Bio-Imaging
Frederic Lavancier, Thierry Pecot, Liu Zengzhen, and Charles Kervrann

Simulation-Selection-Extrapolation: Estimation in High-Dimensional Errors-in-Variables Models
Linh Nghiem and Cornelis J. Potgieter

A Functional Generalized F-Test for Signal Detection With Applications to Event-Related Potentials Significance Analysis
David Causeur, Ching-Fan Sheu, Emeline Perthame, and Flavia Rufini

An adaptive trial design to optimize dose-schedule regimes with delayed outcomes
Ruitao Lin, Peter F. Thall, and Ying Yuan

Adaptive treatment allocation for comparative clinical studies with recurrent events data
Jingya Gao, Pei-Fang Su, Feifang Hu, and Siu Hung Cheung

Horseshoe-Based Bayesian Nonparametric Estimation of Effective Population Size Trajectories
James R. Faulkner, Andrew F. Magee, Beth Shapiro, and Vladimir N. Minin

Distance-based analysis of variance for brain connectivity
Russell T. Shinohara, Haochang Shou, Marco Carone, Robert Schultz, Birkan Tunc, Drew Parker, Melissa Lynne Martin, and Ragini Verma

Comment on "Wang et al. (2005), Robust Estimating Functions and Bias Correction for Longitudinal Data Analysis"
Nicola Lunardon and Giovanna Menardi

A general framework for modelling population abundance data
P. Besbeas and B. J. T. Morgan

CACE and meta-analysis (Letter to the editor)
Stuart Baker

Robust inference on the average treatment effect using the outcome highly adaptive lasso
Cheng Ju, David Benkeser, and Mark J. van der Laan

Testing the heritability and parent-of-origin hypotheses for ages at onset of psoriatic arthritis under biased sampling
Lajmi Lakhal-Chaieb, Richard J. Cook, and Yujie Zhong

Bayesian data integration and variable selection for pan-cancer survival prediction using protein expression data
Arnab KumarMaity, Anirban Bhattacharya, Bani K. Mallick, and Veerabhadran Baladandayuthapani

Building generalized linear models with ultrahigh dimensional features: A sequentially conditional approach
Qi Zheng, Hyokyoung G. Hong, and Yi Li

Data-adaptive longitudinal model selection in causal inference with collaborative targeted minimum loss-based estimation
Mireille E. Schnitzer, Joel Sango, Steve Ferreira Guerra, and Mark J. van der Laan

Global identifiability of latent class models with applications to diagnostic test accuracy studies: a Grobner basis approach
Rui Duan, Ming Cao, Yang Ning, Mingfu Zhu, Bin Zhang, Aidan McDermott, Haitao Chu, Xiaohua Zhou, Jason H. Moore, Joseph G. Ibrahim, Daniel O. Scharfstein, and Yong Chen

Quantification of prior impact in terms of effective current sample size
Manuel Wiesenfarth, and Silvia Calderazzo

Improving estimation efficiency for regression with MNAR covariates
Menglu Che, Peisong Han, and Jerald F. Lawless

Randomization inference with general interference and censoring
Wen Wei Loh, Michael G. Hudgens, John D. Clemens, Mohammad Ali, and Michael E. Emch

On continuous-time capture-recapture in closed populations
W. Zhang, and Simon Bonner

Permutation inference methods for multivariate meta-analysis
Hisashi Noma, Kengo Nagashima, and Toshi A. Furukawa

Novel two-phase sampling designs for studying binary outcomes
Le Wang, Matthew L. Williams, Yong Chen, and Jinbo Chen

Design and Analysis of Bridging Studies With Prior Probabilities on the Null and Alternative Hypotheses
Donglin Zeng, Zhiying Pan, and Danyu Lin

A geostatistical framework for combining spatially referenced disease prevalence data from multiple diagnostics
Benjamin Amoah, Peter J. Diggle, and Emanuele Giorgi

Structured gene-environment interaction analysis
Mengyun Wu, Qingzhao Zhang, and Shuangge Ma

Biclustering Via Sparse Clustering
Erika S. Helgeson, Qian Liu, Guanhua Chen, Michael R. Kosorok, and Eric Bair

An online updating approach for testing the proportional hazards assumption with streams of survival data
Yishu Xue, HaiYing Wang, Jun Yan, and Elizabeth D. Schifano

READER REACTION: Robustness of ANCOVA in randomised trials with unequal randomisation
Jonathan W. Bartlett

Integrative factorization of bidimensionally linked matrices
Jun Young Park, and Eric F. Lock

Large scale maximum average power multiple inference on time-course count data with application to RNA-seq analysis
Meng Cao, Wen Zhou, F. Jay Breidt, and Graham Peers

A Bayesian Approach to Joint Modeling of Matrix-valued Imaging Data and Treatment Outcome with Applications to Depression Studies
Bei Jiang, Eva Petkova, Thaddeus Tarpey, and R. Todd Ogden

A spatial open-population capture–recapture model
Murray G Efford, and Matthew Schofield

A heterogeneity measure for cluster identification with application to disease mapping
Pei-Sheng Lin, and Jun Zhu

Analysis of secondary phenotypes in multi-group association studies
Fan Zhou, Haibo Zhou, Tengfei Li, and Hongtu Zhu

Bias correction of bounded location error in binary data
Nelson Walker, Trevor Hefley, and Daniel Walsh

Multinomial N-mixture models for removal sampling
Linda M. Haines

Reader Reaction: Sharp bounds on the relative treatment effect for ordinal outcomes
Jiannan Lu, Yunshu Zhang, and Peng Ding

Equivalence of regression curves sharing common parameters
Kathrin Mollenhoff, Frank Bretz, and Holger Dette

Assessing the Goodness of Fit of Logistic Regression Models in Large Samples: A Modification of the Hosmer-Lemeshow Test
Giovanni Nattino, Michael L. Pennell, and Stanley Lemeshow

Cox regression with survival-time-dependent missing covariate values
Yanyao Yi, Ting Ye, Menggang Yu, and Jun Shao

Simultaneous confidence corridors for mean functions in functional data analysis of imaging data
Yueying Wang, Guannan Wang, Li Wang, and R. Todd Ogden

Penalized Survival Models for the Analysis of Alternating Recurrent Event Data
Lili Wang, Kevin He, and Douglas E. Schaubel

Predictively consistent prior effective sample sizes
Beat Neuenschwander, Sebastian Weber, Heinz Schmidli, and Anthony O’Hagan

Testing small study effects in multivariate meta-analysis
Chuan Hong, Georgia Salanti, Sally Morton, Richard Riley, Haitao Chu, Stephen E. Kimmel, and Yong Chen

Data reduction prior to inference: Are there consequences of comparing groups using a t-test based on principal component scores?
Edward J. Bedrick

An adaptive independence test for microbiome community data
Yaru Song, Hongyu Zhao, and Tao Wang

Adjusting for time-varying confounders in survival analysis using structural nested cumulative survival time models
Shaun Seaman, Oliver Dukes, Ruth Keogh, and Stijn Vansteelandt

Designing precision medicine trials to yield greater population impact
Ying-Qi Zhao and Michael L. LeBlanc

Sequential adaptive variables and subject selection for GEE methods
Zimu Chen, Zhanfeng Wang, and Yuan-chin Ivan Chang

The profile inter-unit reliability
Kevin He, Claudia Dahlerus, Lu Xia, Yanming Li, and John D. Kalbfleisch

Inverse probability weighting methods for Cox regression with right-truncated data
Bella Vakulenko-Lagun, Micha Mandel, and Rebecca A. Betensky

Gene-based association analysis for bivariate time-to-event data through functional regression with copula models
Yue Wei, Yi Sun Liu, Chen Tao, and Ying Wei Ding

Bayesian design of biosimilars clinical programs involving multiple therapeutic indications
Matthew A. Psioda, Kuolung Hu, Yang Zhang, Jean Pan, and Joseph G. Ibrahim

Inference in MCMC step selection models
Theo Michelot, Paul G. Blackwell, Simon Chamaille-Jammes, and Jason Matthiopoulos

Approximation of bias and mean squared error in two-sample Mendelian randomization analyses
Lu Deng, Han Zhang, Lei Song, and Kai Yu

On Mendelian randomization in case-control studies
Han Zhang, Jing Qin, Sonja I. Berndt, Demetrius Albanes, Lu Deng, Mitchell H. Gail and Kai Yu

Power calculation for cross-sectional stepped wedge cluster randomized trials with variable cluster sizes
Linda J. Harrison, Tom Chen, and Rui Wang

Corrections for measurement error due to delayed onset of illness for case-crossover designs
Brent A. Coull, Seokho Lee, Glen McGee, Justin Manjourides, Murray A. Mittleman, and Gregory A. Wellenius

Dynamic modelling of multivariate dimensions and their temporal relationships using latent processes: application to Alzheimer’s disease
Bachirou O. Tadde, Helene Jacqmin-Gadda, Jean Francois Dartigues, Daniel Commenges, and Cecile Proust-Lima

One-step targeted maximum likelihood estimation for time-to-event outcomes
Weixin Cai, and Mark J. van der Laan

Discovering structure in multiple outcomes models for tests of childhood neurodevelopment
Amy LaLonde, Tanzy Love, Sally W. Thurston, and Philip W. Davidson

A temporally-stratified extension of space-for-time Cormack-Jolly-Seber for migratory animals
Dalton Hance, Russell Perry, John M. Plumb, and Adam C. Pope

Rejoinder to "On continuous-time capture-recapture in closed populations"
Matthew Schofield and Richard Barker

Statistical inference for net benefit measures in biomarker validation studies
Tracey L. Marsh, Holly Janes, and Margaret S. Pepe

Estimating Individualized Treatment Regimes from Crossover Designs
Crystal T. Nguyen, Daniel J. Luckett, Anna R. Kahkoska, Grace E. Shearrer, Donna Spruijt-Metz, Jaimie N. Davis, and Michael R. Kosorok

From mixed effects modeling to spike and slab variable selection: A Bayesian regression model for group testing data
Chase N. Joyner, Christopher S. McMahan, Joshua M. Tebbs, and Christopher R. Bilder

Rejoinder to "Robustness of ANCOVA in randomized trials with unequal randomization" by Jonathan W. Bartlett
Bingkai Wang, Elizabeth L. Ogburn, and Michael Rosenblum

Order-restricted inference for clustered ROC data with application to fingerprint matching accuracy
Wei Zhang, Larry L. Tang, Qizhai Li, Aiyi Liu, and Mei-Ling Ting Lee

Bayesian shrinkage estimation of high dimensional causal mediation effects in omics studies
Yanyi Song, Xiang Zhou, Min Zhang, Wei Zhao, Yongmei Liu, Sharon L. R. Kardia, Ana V. Diez Roux, Belinda L. Needham, Jennifer A. Smith, and Bhramar Mukherjee

Discussion on "Assessing the goodness of fit of logistic regression models in large samples: A modification of the Hosmer-Lemeshow test" by Giovanni Nattino, Michael L. Pennell, and Stanley Lemeshow
Galit Shmueli

Discussion on "Assessing the goodness of fit of logistic regression models in large samples: A modification of the Hosmer-Lemeshow test" by Giovanni Nattino, Michael L. Pennell, and Stanley Lemeshow
Dandan Liu and Bryan Shepherd

Discussion on "Assessing the goodness of fit of logistic regression models in large samples: A modification of the Hosmer-Lemeshow test" by Giovanni Nattino, Michael L. Pennell, and Stanley Lemeshow
Ivy Liu and Daniel Fernandez

Multivariate Hierarchical Frameworks for Modelling Delayed Reporting in Count Data
Oliver Stoner and Theo Economou