Papers to Appear in Biometrics

Vol. 74, No. 2
June 2018



Data-driven confounder selection via Markov and Bayesian networks
Jenny Haggstrom

Discussion on "Data-driven confounder selection via Markov and Bayesian networks" by Jenny Haggstrom
Edward H. Kennedy and Sivaraman Balakrishnany

Discussion on "Data-driven confounder selection via Markov and Bayesian networks" by Jenny Haggstrom
Thomas S. Richardson, James M. Robins, and Linbo Wang

Rejoinder to "Data-driven confounder selection via Markov and Bayesian networks"
Jenny Haggstrom

Spatial capture-mark-resight estimation of animal population density
Murray G. Efford and Christine M. Hunter

Integrated powered density: screening ultrahigh dimensional covariates with survival outcomes
Hyokyoung G. Hong, Xuerong Chen, David C. Christiani, and Yi Li

Joint principal trend analysis for longitudinal high-dimensional data
Yuping Zhang and Zhengqing Ouyang

Eigenvalue significance testing for genetic association
Yi-Hui Zhou, J. S. Marron, and Fred A. Wright

A GLM-based latent variable ordination method for microbiome samples
Michael Sohn and Hongzhe Li

Empirical null estimation using zero-inflated discrete mixture distributions and its application to protein domain data
Iris Ivy M. Gauran, Junyong Park, Johan Lim, DoHwan Park, John Zylstra, Thomas Peterson, Maricel Kann, and John L. Spouge

Augmented and doubly robust G-estimation of causal effects under a structural nested failure time model
Karl Mertens and Stijn Vansteelandt

Inverse probability weighted Cox regression for doubly truncated data
Micha Mandel, Jacobo de Una-Alvarez, David K. Simon, and Rebecca A. Betensky

A semiparametric likelihood-based method for regression analysis of mixed panel-count data
Liang Zhu, Ying Zhang, Yimei Li, Jianguo Sun, and Leslie L. Robison

Monte Carlo methods for nonparametric regression with heteroscedastic measurement error
Julie McIntyre, Brent A. Johnson, and Stephen M. Rappaport

Optimal treatment assignment to maximize expected outcome with multiple treatments
Zhilan Lou, Jun Shao, and Menggang Yu

Estimation and evaluation of linear individualized treatment rules to guarantee performance
Xin Qiu, Donglin Zeng, and Yuanjia Wang

Adaptive designs for the one-sample log-rank test
Rene Schmidt, Andreas Faldum, and Robert Kwiecien

Experimental designs for multi-drug combination studies using signaling networks
Hengzhen Huang, Hong-Bin Fang, and Ming T. Tan

A matrix-based method of moments for fitting multivariate network meta-analysis models with multiple outcomes and random inconsistency effects
Dan Jackson, Sylwia Bujkiewicz, Martin Law, Richard D. Riley, and Ian R. White

Risk prediction for heterogeneous populations with application to hospital admission prediction
Jared Huling, Menggang Yu, Muxuan Liang, and Maureen Smith

Regularity of a renewal process estimated from binary data
John D. Rice, Robert L. Strawderman, and Brent A. Johnson

Analysis of restricted mean survival time for length-biased data
Chi Hyun Lee, Jing Ning, and Yu Shen

Clustering distributions with the marginalized nested Dirichlet process
Daiane Aparecida Zuanetti, Peter Mueller, Yitan Zhu, Shengjie Yang, and Yuan Ji

Covariate-adjusted Spearman's rank correlation with probability-scale residuals
Qi Liu, Chun Li, Valentine Wanga, and Bryan E. Shepherd

Heterogeneous reciprocal graphical models
Yang Ni, Peter Mueller, Yitan Zhu, and Yuan Ji

Estimation of cis-eQTL effect sizes using a log of linear model
John Palowitch, Andrey Shabalin, Yihui Zhou, Andrew B. Nobel, and Fred A. Wright


Continuous-time capture-recapture in closed populations
Matthew R. Schofield, Richard J. Barker, and Nicholas Gelling

Bayesian variable selection for multistate Markov models with interval-censored data in an ecological momentary assessment study of smoking cessation
Matthew D. Koslovsky, Michael D. Swartz, Wenyaw Chan, Luis Leon-Novelo, Anna V. Wilkinson, Darla E. Kendzor, and Michael S. Businelle

Fully-Bayesian spectral methods for imaging data
Brian J. Reich, Joseph Guinness, Simon N. Vandekar, Russell T. Shinohara, and Ana-Maria Staicu

Testing for gene-environment interaction under exposure misspecification
Ryan Sun, Raymond J. Carroll, David C. Christiani, and Xihong Lin

Single index methods for evaluation of marker-guided treatment rules based on multivariate marker panels
Veronika Skrivankova and Patrick J. Heagerty

Sample size determination for multilevel hierarchical designs using generalized linear mixed models
A. Amatya and D. Bhaumik

Improved dynamic predictions from joint models of longitudinal and survival data with time-varying effects using P-splines
E. R. Andrinopoulou, P. H. C. Eilers, J. J. M. Takkenberg, and D. Rizopoulos

Efficiency of two sample tests via the restricted mean survival time for analyzing event time observations
Lu Tian, Haoda Fu, Stephen J. Ruberg, Hajime Uno, and L. J. Wei

Modeling the causal effect of treatment initiation time on survival: Application to HIV/TB co-infection
Liangyuan Hu, Joseph W. Hogan, Ann W. Mwangi, and Abraham Siika

Modeling associations between latent event processes governing time series of pulsing hormones
Huayu Liu, Nichole E. Carlson, Gary K. Grunwald, and Alex J. Polotsky

Cox regression model with doubly truncated data
Lior Rennert and Sharon X. Xie

A C-index for recurrent event data: Application to hospitalizations among dialysis patients
Sehee Kim, Douglas E. Schaubel, and Keith P. McCullough

A two-stage model for wearable device data
Jiawei Bai, Yifei Sun, Jennifer A. Schrack, Ciprian M. Crainiceanu, and Mei-Cheng Wang

Case-only approach to identifying markers predicting treatment effects on the relative risk scale
James Y. Dai, Jason Liang, Michael LeBlanc, Ross L. Prentice, and Holly Janes


A note on testing and estimation in marker-set association study using semiparametric quantile regression kernel machine
Xiang Zhan and Michael C. Wu

Rejoinder to "A note on testing and estimation in marker-set association study using semiparametric quantile regression kernel machine"
Dehan Kong, Arnab Maity, Fang-Chi Hsu, and Jung-Ying Tzeng


Papers to appear in future issues of Biometrics

Quantifying publication bias in meta-analysis
Lifeng Lin and Haitao Chu

Discussion on "Quantifying publication bias in meta-analysis"
Nancy L. Geller

Discussion on "Quantifying publication bias in meta-analysis"
Dan Jackson

Discussion on "Quantifying publication bias in meta-analysis"
Christopher H. Schmid

Rejoinder to "Quantifying publication bias in meta-analysis"
Lifeng Lin and Haitao Chu

On the fast small-sample kernel independence test for microbiome community-level association analysis
Bin Guo and Baolin Wu

Statistical inference in a growth curve quantile regression model for longitudinal data
Hyunkeun Ryan Cho

A regression framework for assessing covariate effects on the reproducibility of high-throughput experiments
Qunhua Li and Feipeng Zhang

C-learning: a new classification framework to estimate optimal dynamic treatment regimes
Baqun Zhang and Min Zhang

New semiparametric method for predicting high-cost patients
Adam Maidman and Lan Wang

Toward a diagnostic toolkit for linear models with Gaussian-process distributed random effects
Maitreyee Bose, James S. Hodges, and Sudipto Banerjee

Dynamic borrowing through empirical power priors that control type I error
Stavros Nikolakopoulos, Ingeborg van der Tweel, and Kit C. B. Roes

Sieve analysis using the number of infecting pathogens
Dean Follmann and Chiung-Yu Huang

Detecting treatment differences in group sequential longitudinal studies with covariate adjustment
Neal O. Jeffries, James F. Troendle, and Nancy L. Geller

A multi-source adaptive platform design for testing sequential combinatorial therapeutic strategies
Alexander M. Kaizer, Brian P. Hobbs, and Joseph S. Koopmeiners

Time-dynamic profiling with application to hospital readmission among patients on dialysis
Jason P. Estes, Danh V. Nguyen, Yanjun Chen, Lorien S. Dalrymple, Connie M. Rhee, Kamyar Kalantar-Zadeh, and Damla Senturk

Discussion on "Time-dynamic profiling with application to hospital readmission among patients on dialysis," by Jason P. Estes, Danh V. Nguyen, Yanjun Chen, Lorien S. Dalrymple, Connie M. Rhee, Kamyar Kalantar-Zadeh, and Damla Senturk
Sebastien Haneuse, Jose Zubizarreta, and Sharon-Lise T. Normand

Discussion on "Time-dynamic profiling with application to hospital readmission among patients on dialysis," by Jason P. Estes, Danh V. Nguyen, Yanjun Chen, Lorien S. Dalrymple, Connie M. Rhee, Kamyar Kalantar-Zadeh, and Damla Senturk
John D. Kalbfleisch and Kevin He

Discussion on "Time-dynamic profiling with application to hospital readmission among patients on dialysis," by Jason P. Estes, Danh V. Nguyen, Yanjun Chen, Lorien S. Dalrymple, Connie M. Rhee, Kamyar Kalantar-Zadeh, and Damla Senturk
Els Goetghebeur

Rejoinder to "Time-dynamic profiling with application to hospital readmission among patients on dialysis"
Jason P. Estes, Danh V. Nguyen, Yanjun Chen, Lorien S. Dalrymple, Connie M. Rhee, Kamyar Kalantar-Zadeh, and Damla Senturk

Semiparametric estimation of the accelerated mean model with panel count data under informative examination times
Sy Han Chiou, Gongjun Xu, Jun Yan, and Chiung-Yu Huang

Regression analysis for secondary response variable in a case-cohort study
Yinghao Pan, Jianwen Cai, Sangmi Kim, and Haibo Zhou

General single-index survival regression models for incident and prevalent covariate data and prevalent data without follow-up
Shih-Wei Chen and Chin-Tsang Chiang

A utility-based design for randomized comparative trials with ordinal outcomes and prognostic subgroups
Thomas A. Murray, Ying Yuan, Peter F. Thall, Joan H. Elizondo, and Wayne L. Hofstetter

A scalable multi-resolution spatio-temporal model for brain activation in fMRI data
Stefano Castruccio, Hernando Hombao, and Marc G. Genton

Subtype classification and heterogeneous prognosis model construction in precision medicine
Na You, Shun He, Xueqin Wang, Junxian Zhu, and Heping Zhang

MILFM: Multiple Index Latent Factor Model based on high-dimensional features
Hojin Yang, Hongtu Zhu, and Joseph G. Ibrahim

Modeling survival distribution as a function of time to treatment discontinuation: a dynamic treatment regime approach
Shu Yang, Anastasios A. Tsiatis, and Michael Blazing

Model-averaged confounder adjustment for estimating multivariate exposure effects with linear regression
Ander Wilson, Corwin M. Zigler, Chirag J. Patel, and Francesca Dominici

Generalized accelerated recurrence time model for multivariate recurrent event data with missing event type
Huijuan Ma, Limin Peng, Zhumin Zhang, and HuiChuan J. Lai

A wild bootstrap approach for the Aalen-Johansen estimator
T. Bluhmki, C. Schmoor, D. Dobler, M. Pauly, J. Finke, M. Schumacher, and J. Beyersmann

An alternative robust estimator of average treatment effect in causal inference
Jianxuan Liu, Yanyuan Ma, and Lan Wang

Estimating individualized treatment rules for ordinal treatments
Jingxiang Chen, Haoda Fu, Xuanyao He, Michael R. Kosorok, and Yufeng Liu

Methods for multivariate recurrent event data with measurement error and informative censoring
Hsiang Yu, Yu-Jen Cheng, and Ching-Yun Wang

A Bayesian nonparametric approach to causal inference on quantiles
Dandan Xu, Michael J. Daniels, and Almut G. Winterstein

An approximate joint model for multiple paired longitudinal outcomes and time-to-event data
Angelo F. Elmi, Katherine L. Grantz, and Paul S. Albert

A D-vine copula based model for repeated measurements extending linear mixed models with homogeneous correlation structure
Matthias Killiches and Claudia Czado

Bayesian enhancement two-stage design for single-arm Phase II clinical trials with binary and time-to-event endpoints
Haolun Shi and Guosheng Yin

Regularized continuous-time Markov model via elastic net
Shuang Huang, Chengcheng Hu, Melanie L. Bell, Dean Billheimer, Stefano Guerra, Denise Roe, Monica M. Vasquez, and Edward J. Bedrick

Motivating sample sizes in adaptive phase I trials via Bayesian posterior credible intervals
Thomas M. Braun

A group sequential test for treatment effect based on the Fine-Gray model
Michael J. Martens and Brent R. Logan

Model selection for semiparametric marginal mean regression accounting for within-cluster subsampling variability and informative cluster size
Chung-Wei Shen and Yi-Hau Chen

A statistical model for helices with applications
Kanti V. Mardia, Karthik Sriram, and Charlotte M. Deane

Nonparametric estimation of transition probabilities for a general progressive multi-state model under cross-sectional sampling
Jacobo de Una-Alvarez and Micha Mandel

Sensitivity analysis and power for instrumental variable studies
Xuran Wang, Yang Jiang, Nancy R. Zhang, and Dylan S. Small

Bayesian nonparametric generative models for causal inference with missing at random covariates
Jason Roy, Kirsten J. Lum, Bret Zeldow, Jordan D. Dworkin, Vincent Lo Re III, and Michael J. Daniels

Power and sample size calculation incorporating misspecifications of the variance function in comparative clinical trials with over-dispersed count data
Masataka Igeta, Kunihiko Takahashi, and Shigeyuki Matsui

Estimation of the optimal surrogate based on a randomized trial
Brenda L. Price, Peter B. Gilbert, and Mark J. van der Laan

Scalable Bayesian variable selection for structured high-dimensional data
C. Chang, S. Kundu, and Q. Long

Mean residual life regression with functional principal component analysis on longitudinal data for dynamic prediction
Xiao Lin, Tao Lu, Fangrong Yan, Ruosha Li, and Xuelin Huang

Pseudo and conditional score approach to joint analysis of current count and current status data
Chi-Chung Wen and Yi-Hau Chen

Multiple robust estimation of marginal structural mean models for unconstrained outcomes
Lucia Babino, Andrea Rotnitzky, and James Robins

Using survival information in truncation by death problems without the monotonicity assumption
Fan Yang and Peng Ding

On the analysis of discrete time competing risks data
Minjung Lee, Eric J. Feuer, and Jason P. Fine

A powerful approach to the study of moderate effect modification in observational studies
Kwonsang Lee, Dylan S. Small, and Paul R. Rosenbaum

Exponential family functional data analysis via a low-rank model
Gen Li, Jianhua Z. Huang, and Haipeng Shen

Order selection and sparsity in latent variable models via the ordered factor LASSO
Francis K. C. Hui, Emi Tanaka, and David I. Warton

Physical activity classification with dynamic discriminative methods
Evan L. Ray, Jeffer E. Sasaki, Patty S. Freedson, and John Staudenmayer

Doubly robust matching estimators for high dimensional confounding adjustment
Joseph Antonelli, Matthew Cefalu, Nathan Palmer, and Denis Agniel

A boxplot for circular data
Davide Buttarazzi, Giuseppe Pandolfo, and Giovanni C. Porzio

Sparse generalized eigenvalue problem with application to canonical correlation analysis for integrative analysis of methylation and gene expression data
Sandra E. Safo, Jeongyoun Ahn, Yongho Jeon, and Sungkyu Jung

New robust statistical procedures for the polytomous logistic regression models
Elena Castilla, Abhik Ghosh, Nirian Martin, and Leandro Pardo

Semiparametric regression analysis of interval-censored data with informative dropout
Fei Gao, Donglin Zeng, and D. Y. Lin

Varying-coefficient semiparametric model averaging prediction
Jialiang Li, Xiaochao Xia, Weng Kee Wong, and David Nott

Detection of multiple perturbations in multi-omics biological networks
Paula J. Griffin, Yuqing Zhang, W. Evan Johnson, and Eric D. Kolaczyk

Semi-parametric methods of handling missing data in mortal cohorts under non-ignorable missingness
Lan Wen and Shaun R. Seaman

Optimal two-stage dynamic treatment regimes from a classification perspective with censored survival data
Rebecca Hager, Anastasios A. Tsiatis, and Marie Davidian

Multiple imputation of missing data in nested case-control and case-cohort studies
Ruth H. Keogh, Shaun R. Seaman, Jonathan W. Bartlett, and Angela M. Wood

Bayesian optimal interval design with multiple toxicity constraints
Ruitao Lin

An asymptotic approximation to the N-mixture model for the estimation of disease prevalence
Ben Brintz, Claudio Fuentes, and Lisa Madsen

Convex mixture regression for quantitative risk assessment
Antonio Canale, Daniele Durante, and David B. Dunson

A robust approach to sample size calculation in cancer immunotherapy trials with delayed treatment effect
Ting Ye and Menggang Yu

On the alternative hypotheses for the win ratio
Lu Mao

Rejoinder to "On the alternative hypotheses for the win ratio"
Xiaodong Luo, Hong Tian, Surya Mohanty, and Wei Yann Tsai

A partially linear proportional hazards model for current status data
Minggen Lu and Christopher S. McMahan

Estimating the causal effect of treatment regimes for organ transplantation
Jeffrey A. Boatman and David M. Vock

Sample size determination for GEE analyses of stepped wedge cluster randomized trials
Fan Li, Elizabeth L. Turner, and John S. Preisser

Threshold regression to accommodate a censored covariate
Jing Qian, Sy Han Chiou, Jacqueline E. Maye, Folefac Atem, Keith A. Johnson and Rebecca A. Betensky

Identifying disease-associated copy number variations by a doubly penalized regression model
Yichen Cheng, James Y. Dai, Xiaoyu Wang, and Charles Kooperberg

A hybrid Phase I-II/III clinical trial design allowing dose re-optimization in Phase III
Andrew G. Chapple and Peter F. Thall

Discussion of “A Hybrid Phase I-II/III Clinical Trial Design Allowing Dose Re-Optimization in Phase III” by Andrew G. Chapple and Peter F. Thall
Eric S. Leifer and Nancy L. Geller

Discussion of “A Hybrid Phase I-II/III Clinical Trial Design Allowing Dose Re-Optimization in Phase III” by Andrew G. Chapple and Peter F. Thall
Tianjian Zhou and Yuan Ji

Model assisted sensitivity analyses for hidden bias with binary outcomes
Giovanni Nattino and Bo Lu

Model confidence bounds for variable selection
Yang Li, Yuetian Luo, Davide Ferrari, Xiaonan Hu, and Yichen Qin

On doubly robust estimation of the hazard difference
Oliver Dukes, Torben Martinussen, Eric J. Tchetgen Tchetgen, and Stijn Vansteelandt

Analysis of multiple survival events in generalized case-cohort designs
Soyoung Kim, Donglin Zeng, and Jianwen Cai

Sufficient dimension reduction via random-partitions for the large-p-small-n problem
Hung Hung and Su-Yun Huang

Joint skeleton estimation of multiple directed acyclic graphs for heterogeneous population
Jianyu Liu, Wei Sun, and Yufeng Liu

A useful design utilizing the information fraction in a group sequential clinical trial with censored survival data
Chih-Yuan Hsu, Chen-Hsin Chen, Ken-Ning Hsu, and Ya-Hung Lu

Double robust estimation for multiple unordered treatments and clustered observations: Evaluating drug-eluting coronary artery stents
Sherri Rose and Sharon-Lise Normand

Bayesian additive adaptive basis tensor product models for modeling high dimensional surfaces: An application to high-throughput toxicity testing
Matthew W. Wheeler

Generalized linear models with linear constraints for microbiome compositional data
Jiarui Lu, Pixu Shi, and Hongzhe Li

Personalized schedules for surveillance of low-risk prostate cancer patients
Anirudh Tomer, Daan Nieboer, Monique J. Roobol, Ewout W. Steyerberg, and Dimitris Rizopoulos

Logistic regression augmented community detection for network data with application in identifying autism-related gene pathways
Yunpeng Zhao, Qing Pan, and Chengan Du

Instrumental variable estimation in semi-parametric additive hazards models
Matthias Brueckner, Andrew Titman, and Thomas Jaki

Bayesian negative binomial mixture regression models for the analysis of sequence count and methylation data
Qiwei Li, Alberto Cassese, Michele Guindani, and Marina Vannucci

Removal models accounting for temporary emigration
Ming Zhou, Rachel S. McCrea, Eleni Matechou, Diana J. Cole, and Richard A. Griffiths

Bayesian inference of hub nodes across multiple networks
Junghi Kim, Kim-Anh Do, Min Jin Ha, and Christine B. Peterson

Marginal screening of 2 x 2 tables in large-scale case-control studies
Ian W. McKeague and Min Qian

Flexible parametric approach to classical measurement error variance estimation without auxiliary data
Aurelie Bertrand, Ingrid Van Keilegom, Catherine Legrand

Information content of cluster-period cells in stepped wedge trials
Jessica Kasza and Andrew Forbes

Registration for exponential family functional data
Julia Wrobel, Vadim Zipunnikov, Jennifer Schrack, and Jeff Goldsmith

Regularized latent class model for joint analysis of high dimensional longitudinal biomarkers and a time-to-event outcome
Jiehuan Sun, Jose D. Herazo-Maya, Philip L. Molyneaux, Toby M. Maher, Naftali Kaminski, and Hongyu Zhao

A hidden Markov model for identifying differentially methylated sites in bisulfite sequencing data
Farhad Shokoohi, David A. Stephens, Guillaume Bourque, Tomi Pastinen, Celia M.T. Greenwood, and Aurelie Labbe

Multi-study factor analysis
Roberta De Vito, Ruggero Bellio, Lorenzo Trippa, and Giovanni Parmigiani

A novel Bayesian multiple testing approach to deregulated miRNA discovery harnessing positional clustering
Noirrit Kiran Chandra, Richa Singh, and Sourabh Bhattacharya

Power and sample size for dose-finding studies with survival endpoints under model uncertainty
Qiqi Deng, Xiaofei Bai, Dacheng Liu, Dooti Roy, Zhiliang Ying and Dan-Yu Lin

On assessing binary regression models based on ungrouped data
Chunling Lu and Yuhong Yang

A Bayesian multi-dimensional couple-based latent risk model with an application to infertility
Beom Seuk Hwang, Zhen Chen, Germaine M. Buck Louis, and Paul S. Albert

Semiparametric regression analysis of length-biased interval-censored data
Fei Gao and Kwun Chuen Gary Chan

Semi-supervised validation of multiple surrogate outcomes with application to electronic medical records phenotyping
Chuan Hong, Katherine P. Liao, and Tianxi Cai

Diagonal likelihood ratio test for equality of mean vectors in high-dimensional data
Zongliang Hu, Tiejun Tong, and Marc G. Genton

Adaptive elastic net for group testing
Karl B. Gregory, Dewei Wang, and Christopher S. McMahan